Journal of Oil Palm Research Vol. Special Issue  2008 July p.  87-96

Gene discovery via expressed sequence tags from the oil palm (Elaeis guineensis Jacq.) mesocarp

Author(s): NURNIWALIS Abdul Wahab* ; SUHAMI, N** ; SITI NOR AKMA Abdullah+ ; AMINAH S.* ; MOHAMAD ARIF Manaf*

Expressed sequence tags (ESTs) have been used for many applications such as to reveal gene expression patterns, gene regulation and sequence diversity. A total of 1011 unique transcripts corresponding to 1463 genes have been identified from the ESTs generated from 17-week oil palm mesocarp cDNA library. This approach was found to be successful in the discovery of new and important genes expressed in the mesocarp tissue which are associated with the various cellular processes of the tissue. It was observed that 12.9% of the total genes expressed in the 17-week mesocarp cDNA library can be categorized under metabolism. This is in agreement with the function of the tissue which is involved in many biochemical processes including amino acid and fatty acid metabolism. Most importantly are the discoveries of genes playing important roles in the fatty acid and wax biosynthesis pathway such as acetyl-CoA carboxylase, stearoyl-ACP desaturase, acyl carrier protein (ACP), lysophosphatidic acid acyltransferase, Δ6-palmitoyl-ACP desaturase and lipase. These genes can serve as targets for genetic manipulation where such endeavours have been extensively carried out in other plants such as Brassica napus and Olea europaea to help increase the economic value of the oil. Genes and protein associated with ethylene synthesis and signal transduction pathway were also identified from the 17-week mesocarp ESTs. Dot blot analysis was carried out to help in identifying potential tissuespecific genes, which can lead to the isolation of the tissue-specific promoters for manipulation of the mesocarp tissue. This is in particular to direct accumulation of transgenic products, such as new specialty oils and value-added products like pharmaceuticals and nutraceuticals to the mesocarp.

Keywords: , , , ,

Author Information
* Malaysian Palm Oil Board, P. O. Box 10620, 50720 Kuala Lumpur, Malaysia.

** Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia.

+ Department of Agriculture Technology, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia.

Journal of Oil Palm Research Special Issue on Malaysia-MIT Biotechnology Partnership Programme: Volume 2 - Oil Palm Metabolic Engineering

Cited By

1. Abdullah, M. O., et al. "Oil Palm Genomics." Palm Oil: Production, Processing, Characterization, and Uses., 2012: 59-86.
2. Al-Shanfari, A. B., and S. N. A. Abdullah. "Isolation and Expression Analysis of Transcripts Encoding Metallothioneins in Oil Palm." Biologia Plantarum 58(1) (2014): 18-28.
3. Al-Shanfari, A. B., et al. "Differential Gene Expression Identified by Suppression Subtractive Hybridization during Late Ripening of Fruit in Oil Palm (Elaeis Guineensis Jacq.)." Plant Molecular Biology Reporter 30(3) (2012): 768-79.
4. Arunachalam, V. "Genomics of Cultivated Palms." Genomics of Cultivated Palms., 2012.
5. Meerow, A. W., et al. "Coconut, Date, and Oil Palm Genomics." Genomics of Tree Crops. 9781461409205, 2012: 299-351.
6. Morcillo, F., et al. "Improving Palm Oil Quality through Identification and Mapping of the Lipase Gene Causing Oil Deterioration." Nature Communications 4 (2013)
7. Nurniwalis, A. W., et al. "Genomic Structure and Characterization of a Lipase Class 3 Gene and Promoter from Oil Palm. " Biologia Plantarum 59(2) (2015): 227-236.
8. Premkrishnan, B. V., and V. Arunachalam. "In Silico RAPD Priming Sites in Expressed Sequences and iSCAR Markers for Oil Palm." Comparative and Functional Genomics (2012)
9. Corley, R. H. V., and P. B. Tinker. "The Oil Palm: Fifth Edition." 2015

Source: Scopus
Last updated: 23 May 2017

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